FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164769941
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGATTC4372945426.53970362227659No Hit
CCCACAGT4231083625.6787346910563No Hit
GGATGCCG4132235125.078816408631234No Hit
ATGCTGAA3532259721.43752482135076No Hit
ATGCTAAA3540410.21486989547444216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)