FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132808505
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGGTGA4441722433.44456290656987RNA PCR Primer, Index 38 (100% over 8bp)
GATACGCC3895679629.333058150153864No Hit
AGCCAATT3669682527.63138174019804No Hit
TCGTTCAG112385218.462199766498388No Hit
AGCCAATA2059600.15508042952520246No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)