FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118148571
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC3278957827.7528350300572No Hit
TCTTAAAG3214437427.206739555064107No Hit
AAGACGGA2987649725.28722670712623No Hit
GTCCTTCT2193867518.568718025375016No Hit
CGAGGCTA1485280.1257129043058845No Hit
GTCCTTCA1242060.10512695917414017No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)