FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135806586
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAACCCT5018660436.95446994006609No Hit
TTTCTGTC4396744232.37504402032461No Hit
AGCGAAAG3929562228.934989942240357No Hit
CCGTGTGA4055570.29862837432641154No Hit
GAAACCCA3369270.24809326993905878No Hit
AGCGACAG2375590.17492450623860023No Hit
TTTCTGTA2054260.15126365079231135No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)