FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1761609
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGGCA50946328.92032227355787No Hit
AATAATGG47118826.747592683734016No Hit
TGCCTCAT42080923.88776397032486No Hit
GTGTCATC29298616.63172701774344No Hit
CCAGGGCC36470.20702664439157611No Hit
AATAATGA34780.1974331420877164No Hit
CCCGGGCA32760.18596635235174208No Hit
GTGTCATA32750.18590958606592042No Hit
TGCCTCAG24410.13856650369066006No Hit
TGCCTCCT22660.12863240367187043No Hit
GTGTCCTC21960.12465876366435458No Hit
CCAGGGAA19730.11199988192612548No Hit
TGCCGCAT19480.1105807247805841No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)