FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2033305
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGGCA57915328.48333132510863No Hit
AATAATGG54258626.684929216226784No Hit
TGCCTCAT48183023.696887579581027No Hit
GTGTCATC33480716.46614747910422No Hit
CCAGGGCC59550.2928729334753025No Hit
CCCGGGCA54000.2655774711614834No Hit
GTGTCATA40680.2000683616083175No Hit
AATAATGA39870.19608469954089525No Hit
GTGTCCTC35720.17567457907200346No Hit
TGCCTCCT35690.1755270360324693No Hit
TGCCTCAG34300.16869087520072001No Hit
CCAGGGAA26260.12914934060556582No Hit
TGCCGCAT25760.1266902899466632No Hit
TGCCTAAT21670.10657525555683972No Hit
CAAGGGCA21600.10623098846459335No Hit
ACAGGGCA20570.10116534410725396No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)