FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3546079
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTAATC107689430.3685845690409No Hit
AAGGGTGA85097023.9974913136453No Hit
GCCACGCT74352920.96763777682336No Hit
TTACTCAG70272919.817071193281368No Hit
GCCCCGCT285300.8045506036385539No Hit
AAGGGTGC141540.39914508390817016No Hit
CGTTAATA112810.31812602031708825No Hit
CGGTAATC76390.21542103263914877No Hit
GCCACGCG63610.17938122641937757No Hit
AAGGGGGA55030.15518548797136217No Hit
GCCACGCA48850.13775778825006435No Hit
CGTTACTC41860.11804587545849937No Hit
TTACTAAG39130.1103472314068581No Hit
TTACTCCG37240.105017400909568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)