FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161992390
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC5000369930.86793089477845No Hit
ACCGTATG4519659527.900443347986904No Hit
GATTAGAT3283607920.270136763831932No Hit
CTGACTGA3108755719.190751491474384No Hit
GAGTAGAT8351090.5155235995962526No Hit
TGACGCCA3528350.21780961438991053No Hit
GCTTAGAT2263260.1397139705142939No Hit
ACCGTATA2110670.1302943922242273No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)