FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5473134
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC157819328.835270614605818No Hit
ACCGTATG147273626.90845866371991No Hit
GATTAGAT114062520.840436210770648No Hit
CTGACTGA106503719.459362770946225No Hit
TGCCGCCC490040.8953553850499549No Hit
CCCGTATG154330.28197738261113287No Hit
TGACGCCA148140.2706675919135179No Hit
CTGCCTGA134160.24512463974022927No Hit
CTGACTGC96950.17713799808299963No Hit
ACCGTATA60950.11136215557667692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)