FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4835516
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC137399328.414609733480354No Hit
ACCGTATG129473726.775570590605014No Hit
GATTAGAT100272120.73658736730475No Hit
CTGACTGA93218819.277942622876235No Hit
TGCCGCCC545121.1273253981581284No Hit
CCCGTATG178980.3701362998281879No Hit
TGACGCCA148810.30774378577177697No Hit
CTGCCTGA148180.30644092584948535No Hit
CTGACTGC114340.23645873573781992No Hit
GATTAGCT58800.12160025941388676No Hit
ACCGGATG54850.11343153450428041No Hit
ACAGTATG53320.11026744612157213No Hit
ACCGTATA53180.10997792169439621No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)