FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2664416
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC75466028.323655164959227No Hit
GGTCAATA65683524.65211888834176No Hit
TCAGCCGT57794221.69113231567443No Hit
ATCTTTAG55847820.960615759701188No Hit
CAGCGGCC153460.5759611111778341No Hit
TCCGCCGT92450.3469803514165956No Hit
TCAGCCGG60300.2263160107130418No Hit
CAGAGGCA58970.22132429770726492No Hit
GGGCAATA55240.2073249822850486No Hit
GGTCAAGA32270.12111472082437579No Hit
ATATTTAG29140.1093673060062693No Hit
TCAGCCGA28140.10561413833275284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)