FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3041732
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC85182128.00447245187939No Hit
GGTCAATA74348624.442850323434147No Hit
TCAGCCGT65061121.38949125037972No Hit
ATCTTTAG63321220.81748161902495No Hit
CAGCGGCC223730.7355348860451874No Hit
TCCGCCGT144030.47351311686894176No Hit
TCAGCCGG78680.25866841654688844No Hit
GGGCAATA74550.2450906259986087No Hit
CAGAGGCA71690.23568808823394038No Hit
GGTCAAGA40250.13232592483492958No Hit
ATATTTAG40240.13229304882875942No Hit
TCAGCCGA35210.11575641772516448No Hit
ATCGTTAG33790.11108802484900052No Hit
GGTAAATA33380.1097401085960236No Hit
AAGAGGCC33030.10858944838006766No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)