FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177804980
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCACTT5963248533.53814105769141No Hit
TGCGCAGC5219567729.355576542344313No Hit
ACAATTCA4903857727.579979480889683No Hit
GTGTGGAG138880527.810834094748078No Hit
GTGGGGAG11138650.6264532073286136No Hit
CATCACTA3847690.216399450679053No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)