FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1656452
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCACTT49210729.708497439104786No Hit
ACAATTCA48512829.287175239608516No Hit
TGCGCAGC45608627.533909826544928No Hit
GTGTGGAG1426158.609666926660115No Hit
TGCGCCGC70500.42560846918594686No Hit
CATCCCTT64790.3911372016816666No Hit
ACAATTCC43700.2638168808996578No Hit
ACAATTAA42700.25777988133673657No Hit
CATCACTA39040.23568446293644488No Hit
TGCGCAGA32660.1971684057250074No Hit
CCAATTCA30730.18551699656856943No Hit
CCTCACTT26250.15847123852668232No Hit
CATAACTT23100.13945468990348045No Hit
CATCACGT22460.13559101018321085No Hit
AATCACTT19740.11917037137206511No Hit
TGAGCAGC16590.10015382274886322No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)