FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84362433
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA2212889426.230744198664823No Hit
GATGTGGT2040886124.191882896502047No Hit
AGGAGATG2017100523.909937495520072No Hit
CTACATCC1985448323.534744428245684No Hit
CTACATCA2300120.27264742352795823No Hit
TCCTCAAA2187390.259284840682582No Hit
CGGAGATG1644810.1949694836326022No Hit
TCCTCTAA859180.10184390959895621No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)