FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2625804
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA66713225.40677065005614No Hit
CTACATCC63649524.24000420442653No Hit
GATGTGGT63364024.131275601682383No Hit
AGGAGATG63307924.109910716869955No Hit
CTACATCA66260.2523417589431656No Hit
TCCTCAAA64190.24445845919954423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)