FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2674783
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA68090925.456607134111444No Hit
CTACATCC64953424.283614782956224No Hit
GATGTGGT64634224.164277999374153No Hit
AGGAGATG64239724.01678939936436No Hit
TCCTCAAA66790.24970249923077872No Hit
CTACATCA66390.2482070508149633No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)