FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2619705
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA66660025.44561315109907No Hit
CTACATCC63385324.19558690768617No Hit
GATGTGGT63192824.12210535155676No Hit
AGGAGATG63073524.076565872875No Hit
CTACATCA66570.2541125813784377No Hit
TCCTCAAA65220.2489593293901413No Hit
CTACCTCC27020.10314138423982853No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)