FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16912181
Sequences flagged as poor quality0
Sequence length8
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NCAGTTCT675917039.966282290852966No Hit
NAGCAGTC672056439.7380089534283No Hit
NGCACAAA343244720.295708755718735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)