FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2179853
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCGG60205727.61915597060903No Hit
AAGCAGTC57339326.30420491657006No Hit
TGCACAAA54102024.81910477449626No Hit
GCAGTTCT42360819.432870014629426No Hit
GCAGTTCA58990.2706145781389846No Hit
CTTTGCGA30610.14042231288073095No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)