FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91082752
Sequences flagged as poor quality0
Sequence length8
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NGCACCGT4052349844.49085815940212No Hit
NTTGGTAC2024845422.23083246320884No Hit
NCACAATG1695531618.615287337826594No Hit
NAGTTGCA1335548414.66302203956244No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)