FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2525064
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACAATG79668931.551239889365178No Hit
TGCACCGT77791430.807694379231577No Hit
CTTGGTAC56774022.48418257913463No Hit
AAGTTGCA33845413.403779072530439No Hit
TGCCCCGT35120.13908558357332726No Hit
AAATTGCA29400.11643269239908374No Hit
GCACAATA27180.10764083603425496No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)