FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2126414
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA58339127.435438254262813No Hit
TGGTAAAC51798324.359461515960675No Hit
ACTGCTCG50455523.727975831611342No Hit
GAAAGGGT48879722.986916000364936No Hit
ACTGCTCA30340.142681528620485No Hit
CTCCTCAA24350.1145120376370735No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)