FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2171079
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA59799527.543677590727928No Hit
TGGTAAAC52816024.32707423359537No Hit
ACTGCTCG51602423.768089507567435No Hit
GAAAGGGT49707322.895205563685153No Hit
ACTGCTCA29990.13813407987456927No Hit
CTCCTCAA24890.11464345608796364No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)