FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2127320
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA58478027.48904725194141No Hit
TGGTAAAC51694524.30029332681496No Hit
ACTGCTCG50566923.770236729782074No Hit
GAAAGGGT48721422.902713273038376No Hit
ACTGCTCA30010.14106951469454526No Hit
CTCCTCAA24840.11676663595509844No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)