FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86934283
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA2375751127.328126695425787No Hit
ACTGCTCG2132289524.52760207385618No Hit
TGGTAAAC2101471324.173102112086205No Hit
GAAAGGGT1934169222.248635788484044No Hit
ACTGCTCA1286750.14801410394101944No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)