FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2518095
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC68198627.08341027641928No Hit
ACCCTCCT67151426.667540342997388No Hit
CAATGGAG62480324.812526930080082No Hit
TGGAATTA49275519.568562742867126No Hit
CCCCTCCT91010.3614240129939498No Hit
ACCCTCCA26990.10718420075493577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)