FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80583780
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTCCT2229635827.668543222966207No Hit
GTTGCAGC2190161527.17868906124781No Hit
CAATGGAG1847134422.92191306985103No Hit
TGGAATTA1547474919.203304933077103No Hit
CAAGGGAG5640110.6999063583267005No Hit
CACTGGAG3893400.483149338489706No Hit
CCATGGAG1721650.21364721287584176No Hit
ACCCTCCA1002770.12443819339326102No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)