FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13579609
Sequences flagged as poor quality0
Sequence length91
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ANGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCC345283325.426601016273736No Hit
NNNGAATTGGGATAATGAAAAGCCTAATTTCAATCACTAGAAGAAAAGCA340354525.06364505782162No Hit
NNTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCA338243324.90817666399673No Hit
AAACAAACAAAAACCAAAATGGCTAAGTTTACAGCACCAAGTCTATCCCT334079824.60157726190791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)