FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20414774
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT640804231.389238009688476No Hit
CGGGCTTA570105827.926138197758156No Hit
AAACAAAC409638120.065767076334033No Hit
TTCATCGG371698318.207318876025763No Hit
AAACAAAA675780.3310249724047888No Hit
TTCATCGA308980.1513511734197988No Hit
GCTTGGCA278650.13649428595192875No Hit
CGGGCTAA269330.13192896477815527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)