FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20302030
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT637378031.394791555327227No Hit
CGGGCTTA566653627.911179325417212No Hit
AAACAAAC407283620.06122540455314No Hit
TTCATCGG369242718.18747681882058No Hit
AAACAAAA671510.3307600274455313No Hit
TTCATCGA306580.15100952958891303No Hit
GCTTGGCA288940.14232074329512862No Hit
CGGGCTAA271970.133961973260802No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)