FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2588335
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT82287031.79147985094665No Hit
CGGGCTTA70979227.422725420009385No Hit
AAACAAAC52680020.352852316257362No Hit
TTCATCGG48224218.63135954194492No Hit
TTCATCGA41640.16087562081415271No Hit
CGGGCTAA35380.13669018886658799No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)