FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2591985
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT82350231.771094354326895No Hit
CGGGCTTA71005927.39441007567559No Hit
AAACAAAC52782420.363698092388653No Hit
TTCATCGG48322718.643124863762715No Hit
TTCATCGA40580.15655954799121136No Hit
CGGGCTAA34150.13175230566534915No Hit
GCTTGGCA27190.10490029841993685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)