FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23834833
Sequences flagged as poor quality0
Sequence length8
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NGTCCCAC1019867042.78892996649064No Hit
NCGAGAGT688541028.888014445077086No Hit
NTATAGTG338486414.201332981858947No Hit
NACGTTCA336588914.121722606573329No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)