FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1967456
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC53069426.97361465771026No Hit
TTCAGGTG49665225.243359953157785No Hit
GATCTTGA45916623.338056861246198No Hit
ACGGACAT43748722.236177073337345No Hit
CGATCCCC39110.1987846233918319No Hit
CGCTCACC37140.1887716929883057No Hit
ACGGCCAT31840.16183335230876827No Hit
CGATCACA28790.14633109965356278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)