FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006717319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006717319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30732477
Sequences flagged as poor quality0
Sequence length8
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NGATCACC1364680344.40515159256444No Hit
NTCAGGTG685321822.29959531084982No Hit
NATCTTGA682580022.210380243675118No Hit
NCGGACAT340665611.08487285291062No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)