FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006767509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006767509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153440257
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC4737351030.874237912675028No Hit
ACCGTATG4278160727.881605412066012No Hit
GATTAGAT3106003620.242429599163145No Hit
CTGACTGA2942853619.17914931542379No Hit
GAGTAGAT8220180.535725119386368No Hit
TGACGCCA3332980.21721678946353692No Hit
GCTTAGAT2084250.1358346265022223No Hit
ACCGTATA1989080.1296322124903636No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)