FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12241420
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT349343128.53779218424006No Hit
ACAAGGTA313289325.592561974019358No Hit
TACTATAG241966819.766236269975217No Hit
GTGGTACC238210719.45940095185036No Hit
TACTATAT1212620.9905876932578084No Hit
AGTCCCGT526110.4297785714402414No Hit
TACTAAAG479520.39171926132752566No Hit
CGTCGCGT401170.3277152487211451No Hit
CGTCCCGA263900.21557956511581172No Hit
GGGGTACC256610.20962437364292708No Hit
ACAATGTA226050.18465994958101267No Hit
ACCAGGTA217970.17805940814055884No Hit
ACAACGTA212130.1732887197727061No Hit
ACAAGGAA200000.16337973862509414No Hit
TACGATAG172290.14074347583858735No Hit
GTGGTACA152050.12420944628972783No Hit
GACTATAG138990.11354074935750917No Hit
TACTATAA133690.10921118628394418No Hit
TACTATAC124790.10194078791512749No Hit
TACAATAG122900.10039684938512035No Hit
CGACCCGT122850.10035600445046408No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)