FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11130808
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT317245728.50158766551359No Hit
ACAAGGTA279556825.115589092903228No Hit
GTGGTACC217648519.5537017618128No Hit
TACTATAG196488117.65263581943018No Hit
TACTATAT3124012.80663362444128No Hit
TACTAAAG586970.5273381770667502No Hit
ACCAGGTA469320.42164054936532913No Hit
ACAATGTA416880.3745280666057666No Hit
ACAACGTA366070.3288799878679068No Hit
AGTCCCGT334290.3003286014815816No Hit
CGTCCCGG309970.27847933411482795No Hit
CGTCCCGA256810.23071999804506554No Hit
GGGGTACC253940.22814156887801854No Hit
CGTCGCGT216570.194568085263891No Hit
ACAAGGAA191650.17217977347197078No Hit
TACGATAG165510.14869540468221176No Hit
TACTATAA144390.12972104091634676No Hit
TACTATAC137680.12369272742823341No Hit
TCAAGGTA135460.12169826305511694No Hit
CGACCCGT134910.12120413899871421No Hit
GGTCCCGT131640.11826634688155613No Hit
GTGGTACA126680.11381024630017875No Hit
TACAATAG121040.10874322870361253No Hit
GACTATAG114760.10310123038686858No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)