FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192116883
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAAC5986564031.1610510566112No Hit
ACACTGTT4456728223.198003894327186No Hit
CAGGATGG4311960022.444461583316443No Hit
TTTACCCA4177333921.74371057227698No Hit
ACACTGTA2587810.1346997702435137No Hit
TTTACCAA2555870.1330372406677033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)