FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114938424
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACGCC4014128434.92416426381485No Hit
AGCCAATT3908782934.00762568312229No Hit
CTAGGTGA3374149429.35614812327686RNA PCR Primer, Index 38 (100% over 8bp)
TCGTTCAG3965510.34501169078149185No Hit
GATACGCA2420260.2105701397123733No Hit
AGCCAATA2321580.20198467311505855No Hit
GGTACGCC1188330.10338840212390592No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)