FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1766134
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT54431630.81963203245054No Hit
TGTGCGGG51883929.377102756642476No Hit
ACCATAAC32765318.551989826366516No Hit
GTGTATTA25847814.635242852467591No Hit
CACCGCCT124310.7038537279730757No Hit
CCCATAAC85510.48416484819385164No Hit
TGTGCGGA63290.35835332992853314No Hit
CAACGCCG53890.3051297353428449No Hit
GGTGCGGG53020.30020372180140353No Hit
TGGGCGGG51580.29205032007763854No Hit
ACCATACC42780.24222397621018565No Hit
CCACGCCT35730.20230628027091943No Hit
TGTGGGGG33970.19234101149742885No Hit
ACCATAAA32550.1843008514642717No Hit
ACAATAAC31800.18005428806647739No Hit
AAACGCCT27110.15349911161893717No Hit
CAACGCCA26160.14812013131506443No Hit
GTGTATAA23710.1342480242156031No Hit
GGGTATTA21880.12388640952498509No Hit
TGTGAGGG21780.12332020107194584No Hit
CAACGCAT21680.12275399261890661No Hit
CAAAGCCT19360.1096179565083963No Hit
CAACGACT18140.10271021338131761No Hit
ACCCTAAC17790.1007284837956803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)