FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109328301
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT3867601935.37603589028608No Hit
TGTGCGGG3381923430.93365001620212No Hit
ACCATAAC2092201619.136871065068505No Hit
GTGTATTA1427477613.056798531973893No Hit
TGTGCGGA4264880.39009844303717844No Hit
ACCATAAA1501610.13734869985768824No Hit
CAACGCCA1333190.12194372251334996No Hit
GTGTATAA1272710.11641176057423594No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)