FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81148900
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTCCT2253659727.771906951295705No Hit
GTTGCAGC2207039327.197402552591594No Hit
CAATGGAG1867902723.01821343234474No Hit
TGGAATTA1562293619.252184564424162No Hit
CAAGGGAG5356950.6601383382892436No Hit
CACTGGAG3770970.46469761142788135No Hit
CCATGGAG1739600.21437135931602277No Hit
ACCCTCCA962470.11860542780000716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)