FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23834833
Sequences flagged as poor quality0
Sequence length91
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NAGCAGTGGNATCAACGCAGANTNCNTNGGGNTNTNCCTGTGGCANCNGC344411314.449914543139448No Hit
CNAGCGGTATCTCAGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAGGTT344129714.43809990193764No Hit
TATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTAT341627614.333123290605812No Hit
AGCCGCGGTGTTCATGCCGCGGAGCAGCCAGGCTCCTCCGACGAAAACCT339970614.263603189500007No Hit
TNNCCAGGCTCCATATCTTCTACATGGAAAATATGTCAAAGAGCAGGAGC338486414.201332981858947No Hit
NNNATAGAAAACAACCGAAACNANANAATTCNAGCACTGCTTATTNCNAT338268814.192203486384821No Hit
GTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGG336588914.121722606573329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)