FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1960590
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC52863026.962802013679553No Hit
TTCAGGTG49510025.252602532911013No Hit
GATCTTGA45680423.299312961914527No Hit
ACGGACAT43472722.173274371490216No Hit
CGATCCCC43820.2235041492611918No Hit
CGCTCACC40940.20881469353612944No Hit
ACGGCCAT32950.16806165491000158No Hit
CGATCACA30230.1541882800585538No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)