FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18930292
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC539344128.49106078236934No Hit
ACGCGGGT484220325.579124717146467No Hit
TTTACATG436779123.073024969715206No Hit
GAATTCCA394406120.83465484843023Illumina Small RNA Adapter 2 (100% over 8bp)
GAATCCCA613530.3240995965619548No Hit
CGCGATAA280140.1479850390052092No Hit
GAATTCAA192550.10171528257461639No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)