FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2539821
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC69709227.446501151065373No Hit
GCGATGTG67436826.551792429466488No Hit
AGATACAA56762322.348937188880633No Hit
TTTCCACT55512121.85669777515817No Hit
TTTCCACA53190.20942420745398987No Hit
CCCGGTGC36340.1430809494054896No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)