FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2589364
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC71019227.42727557809562No Hit
GCGATGTG68827326.580774275072955No Hit
AGATACAA57951322.380515060841194No Hit
TTTCCACT56687421.892402922107514No Hit
TTTCCACA53360.20607376946617006No Hit
CCCGGTGC34040.1314608529353154No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)