FastQCFastQC Report
Mon 19 Sep 2022
EGAF00006772131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006772131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2539931
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGTGC69522327.371727814653234No Hit
GCGATGTG67310026.50071990144614No Hit
AGATACAA56808222.366040652285434No Hit
TTTCCACT55656221.912485024199476No Hit
TTTCCACA53040.20882457043124397No Hit
CCCGGTGC40860.16087051183673887No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)